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B1  Analysis of Spectrometry Data with Restricted Resources


Baumbach.JPG
PD Dr. Baumbach, Jörg Ingo
Rahnenfuehrer.JPG
Prof. Dr. Rahnenführer, Jörg
Developing resource-aware algorithms for the analysis of spectrometry data enables future mobile spectrometers to identify substances and molecules in medical settings, especially in urgent emergency situations. Here, precision of measurement, time for data analysis, communication bandwidth, available memory and energy resources are limited, and transmitted data must be kept confidential. On the other hand, sufficient data quality and accuracy of analysis must be guaranteed.

This project ends on 12.31.2018

Project management:

PD Dr. Baumbach, Jörg Ingo
Prof. Dr. Rahnenführer, Jörg

Project members:

Horsch, Salome

Alumni project management:


Rahmann.JPG
Prof. Dr. Rahmann, Sven

Alumni:

Bödeker, Bertram
D'Addario, Marianna
Hauschild, Ann-Christin
Dr. Kopczynski, Dominik
Krois, Susanne
Dr. Maddula, Sasidhar
Martin, Marcel
Rupp, Kathrin
Sippel, Ann-Kathrin

Publications:

Gogiashvili/etal/2017b Gogiashvili, Mikheil and Horsch, Salome and Marchan, Rosemarie and Gianmoena, Kathrin and Cadenas, Cristina and Tanner, Berno and Naumann, Sabrina and Ersova, Diana and Lippek, Frank and Rahnenführer, Jörg and Andersson, Jan T. and Hergenröder, Roland and Lambert, Jörg and Hengstler, Jan G. and Edlund, Karolina. Impact of intratumoral heterogeneity of breast cancer tissue on quantitative metabolom ics using high-resolution magic angle spinning 1 H NMR spectroscopy. In NMR in Biomedicine, Vol. 31, No. 2, 2017.


Horsch/etal/2017b Horsch, Salome and Kopczynski, Dominik and Kuthe, Elias and Baumbach, Jörg Ingo and Rahmann, Sven and Rahnenführer, Jörg. A detailed comparison of analysis processes for MCC-IMS data in disease classification---Automated methods can replace manual peak annotations. In PLOS ONE, Vol. 12, No. 9, pages e0184321, 2017.


Yamada/etal/2017a Yamada, Yu-ichi and Yamada, Gen and Otsuka, Mitsuo and Nishikiori, Hirotaka and Ikeda, Kimiyuki and Umeda, Yasuaki and Ohnishi, Hirofumi and Kuronuma, Kojiand Chiba, Hirofumi and Baumbach, Jörg Ingo and Takahashi, Hiroki. Volatile Organic Compounds in Exhaled Breath of Idiopathic Pulmonary Fibrosis for Discrimination from Healthy Subjects. In Lung, pages 1--8, 2017.


Cumeras/etal/2015a Cumeras, R. and Figueras, E. and Davis, C. E. and Baumbach, J. I. and Gràcia, I.. Review on Ion Mobility Spectrometry. Part 1: Current Instrumentation. In Analyst, Vol. 140, No. 5, pages 1376--1390, 2015.


Cumeras/etal/2015b Cumeras, R. and Figueras, E. and Davis, C. E. and Baumbach, J. I. and Gràcia, I.. Trying to detect gas-phase ions? Understanding Ion Mobility Spectrometry Part 2: Hyphenated Methods and Effects of Experimental Parameters. In Analyst, Vol. 140, No. 5, pages 1391--1410, 2015.


Fink/etal/2015a Fink, Tobias and Wolf, Alexander and Maurer, Felix and Albrecht, Frederic W. and Heim, Nathalie and Wolf, Beate and Hauschild, Anne C. and Bödeker, Bertram and Baumbach, Jörg I. and Volk, Thomas and Sessler, Daniel I. and Kreuer, Sascha. Volatile Organic Compounds during Inflammation and Sepsis in Rats: A Potential Breath Test Using Ion-mobility Spectrometry. In Anesthesiology, Vol. 122, pages 117-126, 2015.


Horsch/etal/2015a Horsch, S. and Kopczynski, D. and Baumbach, J. I. and Rahnenführer, J. and Rahmann, S.. From raw ion mobility measurements to disease classification: a comparison of analysis processes. In PeerJ PrePrints, Vol. 3, 2015.


kopczynski/rahmann/2015a Kopczynski, Dominik and Rahmann, Sven. An online peak extraction algorithm for ion mobility spectrometry data. In Algorithms for Molecular Biology, Vol. 10, No. 1, pages 17, 2015.


Cakir/etal/2014a Y. Cakir & L. Métrailler & J. I. Baumbach & T. Kraus. Signals in asbestos related diseases in human breath - preliminary results. In International Journal for Ion Mobility Spectrometry, 2014.


DAddario/etal/2014a D'Addario, Marianna and Kopczynski, Dominik and Baumbach, Jörg Ingo and Rahmann, Sven. A modular computational framework for automated peak extraction from ion mobility spectra. In BMC Bioinformatics, Vol. 15, No. 25, 2014.


fink/etal/2014a Tobias Fink and Jörg I Baumbach and Sascha Kreuer. Ion mobility spectrometry in breath research. In Journal of Breath Research, Vol. 8, No. 2, pages 027104, 2014.


Fink/etal/2014b Fink, Tobias and Wolf, Alexander and Maurer, Felix and Albrecht, Frederic W. and Heim, Nathalie and Wolf, Beate and Hauschild, Anne C. and Bödeker, Bertram and Baumbach, Jörg I. and Volk, Thomas and Sessler, Daniel I. and Kreuer, Sascha. Volatile Organic Compounds during Inflammation and Sepsis in Rats: A Potential Breath Test Using Ion-mobility Spectrometry. In Anesthesiology, 2014.


furtwaengler/etal/2014a Furtwängler, R. and Hauschild, A.-C. and Hübel, J. and Rakicioglou, H. and Bödeker, B. and Maddula, S. and Simon, A. and Baumbach, J. I.. Signals of neutropenia in human breath?. In Int. J. Ion Mobil. Spec., Vol. 17, pages 19-23, 2014.


Handa/etal/2014a Handa, Hiroshi and Usuba, Ayano, and Maddula, Sasidhar, and Baumbach, Jörg Ingo and Mineshita, Masamichi and Miyazawa, Teruomi. Exhaled Breath Analysis for Lung Cancer Detection Using Ion Mobility Spectrometry. In Plos One, 2014.


Kopczynski/Rahmann/2014a Kopczynski, Dominik and Rahmann, Sven. An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. In Brown, Dan and Morgenstern, Burkhard (editors), Algorithms in Bioinformatics, Vol. 8701, pages 232-246, Springer, 2014.


Kreuer/etal/2014a Kreuer, S. and Hauschild, A. and Fink, T. and Baumbach, J. I. and Maddula, S. and Volk, Th.. Two different approaches for pharmacokinetic modeling of exhaled drug concentrations. In Scientific Reports, Vol. 4, 2014.


maurer/etal/2014a F Maurer, A Wolf, T Fink, B Rittershofer, N Heim, T Volk,J I Baumbach, S Kreuer. Wash-out of ambient air contaminations for breath measurements. In Journal of Breath Research, 2014.


Maurer/etal/2014b Maurer, F. and Hauschild, A.-C. and Eisinger, K. and Baumbach, J. and Mayor, A. and Baumbach, J. I.. MIMA—a software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements. In Int. J. Ion Mobil. Spec., Vol. 17, pages 95–101, 2014.


PG572/2014a Alexey Egorov and Alexander König and Marcel Köppen and Henning Kühn and Isabell Kullack and Elias Kuthe and Suzana Mitkovska and Robert Niehage and Andreas Pawelko and Manuel Sträßer and Christian Striewe and Marianna D'Addario and Dominik Kopczynski and Sven Rahmann. Ressourcenbeschränkte Analyse von Ionenmobilitätsspektren mit dem Raspberry Pi. No. 5, TU Dortmund, 2014.


wolf/etal/2014a A Wolf1, J I Baumbach2,3, A Kleber1, F Maurer1,4, S Maddula3, P Favrod4,5, M Jang4, T Fink1, T Volk1 and S Kreuer1 1. Multi-capillary column-ion mobility spectrometer (MCC-IMS) breath analysis in ventilated rats: a model with the feasibility of long-term measurements. In Journal of Breath Research, 2014.


buchinger/etal/2013a H. Buchinger & S. Kreuer & R. Hellbrück & A. Wolf & T. Fink & Th. Volk & B. Bödeker & S. Maddula & J. I. Baumbach. Minimal retarded Propofol signals in human breath using ion mobility spectrometry. In International Journal for Ion Mobility Spectrometry, 2013.


Cumeras/etal/2013a R. Cumeras & E. Figueras & I. Gràcia & S. Maddula & J. I. Baumbach. What is a good control group?. In International Journal for Ion Mobility Spectrometry, 2013.


Hauschild/etal/2013a Hauschild, Anne-Christin and Kopczynski, Dominik and D'Addario, Marianna and Baumbach, Jörg Ingo and Rahmann, Sven and Baumbach, Jan. Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches. In Metabolites, Vol. 3, No. 2, pages 277-293, 2013.


Kreuer/etal/2013a S. Kreuer & R. Hellbrück & T. Fink & N. Heim & Th. Volk & J. I. Baumbach & A.Wolf. Development of a device to measure MCCIMS peaks of pure analytes (IMS-BOX). In International Journal for Ion Mobility Spectrometry, 2013.


Rahmann/etal/2013a Sven Rahmann and Marcel Martin and Johannes H. Schulte and Johannes Köster and Tobias Marschall and Alexander Schramm. Identifying Transcriptional miRNA Biomarkers by Integrating High-Throughput Sequencing and Real-Time PCR Data. In Methods, Vol. 59, No. 1, pages 154--163, 2013.


Schneider/etal/2013a Schneider, Till and Hauschild, Anne-Christin and Baumbach, Jörg Ingo and Baumbach, Jan. An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air. In Journal of Integrative Bioinformatics, Vol. 10, No. 2, 2013.


schneider/etal/2013b Till Schneider, Anne-Christin Hauschild, Joerg Ingo Baumbach and Jan Baumbach. An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air. In Journal of Integrative Bioinformatics, 2013.


Canzar/etal/2011c Canzar, Stefan and Marschall, Tobias and Rahmann, Sven and Schwiegelshohn, Chris. Solving The Minimum String Cover Problem. In David A. Bader and Petra Mutzel (editors), Proceedings of the SIAM Meeting on Algorithm Engineering and Experiments (ALENEX'12), pages 75--83, 2012.


Cumeras/etal/2012a Cumeras R. and Schneider, T. and Favrod, P. and Figueras, E.and Gràcia, I. and Maddula, S. and Baumbach, J. I.. Stability and alignment of MCC/IMS devices. 2012.


DAddario/etal/2012a D'Addario, Marianna and Kriege, Nils and Rahmann, Sven. Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs. In German Conference on Bioinformatics 2012, Vol. 26, pages 82--92, Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2012.


Hauschild/etal/2012a Hauschild, Anne-Christin and Schneider, Till and Pauling, Josch and Rupp , Kathrin and Jang, Mi and Baumbach, Jörg Ingo and Baumbach, Jan. Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data -- Reviewing the State of the Art. In Metabolites, 2012.


juenger/etal/2012a Jünger, Melanie and Vautz, Wolfgang and Kuhns, Martin and Hofmann, Lena and Ulbricht, Siobhán and Baumbach, Jörg Ingo and Quintel, Michael and Perl, Thorsten. Ion mobility spectrometry for microbial volatile organic compounds: A new pathogen identification tool by smelling human pathogenic bacteria. In Applied Microbiology and Biotechnology, Vol. 93, No. 6, pages 2603-2614, 2012.


Kopczynski/etal/2012a Kopczynski, D. and Baumbach, J. I. and Rahmann, S.. Peak modeling for Ion mobility spectrometry measurements. In Signal Processing Conference (EUSIPCO), 2012 Proceedings of the 20th European, pages 1801--1805, IEEE, 2012.


Schramm/etal/2012b Alexander Schramm and Benjamin Schowe and Kathrin Fielitz and Melanie Heilmann and Marcel Martin and Tobias Marschall and Johannes Köster and Jo Vandesompele and Joelle Vermeulen and Katleen de Preter, Jan Koster and Rogier Versteeg and Rosa Noguera and Frank Speleman and Sven Rahmann and Angelika Eggert and Katharina Morik and and Johannes H. Schulte. Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome. In British Journal of Cancer, Vol. 107, No. 8, pages 1409--1417, 2012.


Baumbach/etal/2011a Baumbach, Jörg Ingo and Maddula, Sasidhar and Litterst, Patrick and Westhoff, Michael. Drug delivery related to metabolites in human breath – first results of long term clinical studies using MCC/IMS. 2011.


Baumbach/etal/2011b Baumbach, J.I. and Maddula, S. and Sommerwerck, U. and Besa, V. and Kurth, I. and Bödeker, B. and Teschler, H. and Freitag, L. and Darwiche, K.. Significant different volatile biomarker during bronchoscopic ion mobility spectrometry investigation of patients suffering lung carcinoma. In International Journal for Ion Mobility Spectrometry, Vol. 14, pages 159-166, 2011.


Besa/etal/2011a Besa, V. and Darwiche, K. and Teschler, H. and Kurth, I. and Rabis, T. and Anhenn, O. and Sommerwerck, U. and Baumbach, J.I. and Freitag, L.. Volatile Organic Compounds in Chronic Obstructive Pulmonary Disease. 2011.


Cumeras/etal/2011a Cumeras, R. and Rupp, Kathrin and Schneider, T. and Favrod, P. and Maddula, Sasidhar and Baumbach, Jörg Ingo. Influence of Room Air and Operational Background Emissions on Breath Analysis Using MCC/IMS. 2011.


Darwiche/etal/2011b Darwiche, K. and Baumbach, Jörg Ingo and Sommerwerck, U. and Teschler, H. and Freitag, L.. Volatile Organic Compounds (VOC) sampled during bronchoscopy in lung cancer patients. 2011.


Koczulla/Hattesohl/2011a Koczulla, A. R. and Hattesohl, A. and Biller, H. and Hofbauer, J. and Hohlfeld, J. and Oeser, C. and Gessner, C. and Vogelmeier, C. and Baumbach, J. I. and Wirtz, H. and Jörres, R. A.. Krankheiten erriechen? Eine kurze Übersicht über elektronische Nasen. In Pneumologie, Vol. 65, No. 7, pages 401-405, 2011.


Maddula/Baumbach/2011a Maddula, Sasidhar and Baumbach, Jörg Ingo. Ion Mobility Spectrometry for Metabolic Profiling of Human Breath in Intensive Care and Point of Care Applications. 2011.


Maddula/etal/2011a Maddula, Sasidhar and Rabis, Thomas and Sommerwerck, Urte and Anhenn, Olaf and Darwiche, Kaid and Freitag, Lutz and Teschler, Helmut and Baumbach, Jörg Ingo. Correlation analysis on data sets to detect infectious agents in the airways by ion mobility spectrometry of exhaled breath. In International Journal for Ion Mobility Spectrometry, Vol. 14, No. 4, pages 197-206, 2011.


Maddula/etal/2011b Maddula, Sasidhar and Rupp, Kathrin and Baumbach, Jörg Ingo. Large Scale Scanning of Metabolites in IMS-Chromatograms. 2011.


Rabis/etal/2011a Rabis, T. and Sommerwerck, U. and Anhenn, O. and Darwiche, K. and Freitag, L. and Teschler, H. and Bödeker, B. and Maddula, S. and Baumbach, J. I.. Detection of infectious agents in the airways by ion mobility spectrometry of exhaled breath. In International Journal for Ion Mobility Spectrometry, 2011.


Rupp/etal/2011f Rupp, Kathrin and Maddula, Sasidhar and Baumbach, J. I.. Infections, drug delivery and metabolites detectable in human exhaled breath. 2011.


Westhoff/etal/2011a Westhoff, M. and Litterst, P. and Maddula, Sasidhar and Baumbach, Jörg Ingo. Drug delivery related to metabolites in human breath - first results of long term clinical studies using MCC/IMS. 2011.


Westhoff/etal/2011b Westhoff, M. and Litterst, P. and Maddula, S. and Bödeker, B. and Baumbach, J. I.. Statistical and bioinformatical methods to differentiate chronic obstructive pulmonary disease (COPD) including lung cancer from healthy control by breath analysis using ion mobility spectrometry. In International Journal for Ion Mobility Spectrometry, 2011.


  • Gogiashvili/etal/2017b - Impact of intratumoral heterogeneity of breast cancer tissue on quantitative metabolom ics using high-resolution magic angle spinning 1 H NMR spectroscopy
  • Horsch/etal/2017b - A detailed comparison of analysis processes for MCC-IMS data in disease classification---Automated methods can replace manual peak annotations
  • Yamada/etal/2017a - Volatile Organic Compounds in Exhaled Breath of Idiopathic Pulmonary Fibrosis for Discrimination from Healthy Subjects
  • Cumeras/etal/2015a - Review on Ion Mobility Spectrometry. Part 1: Current Instrumentation
  • Cumeras/etal/2015b - Trying to detect gas-phase ions? Understanding Ion Mobility Spectrometry Part 2: Hyphenated Methods and Effects of Experimental Parameters
  • Fink/etal/2015a - Volatile Organic Compounds during Inflammation and Sepsis in Rats: A Potential Breath Test Using Ion-mobility Spectrometry
  • Horsch/etal/2015a - From raw ion mobility measurements to disease classification: a comparison of analysis processes
  • kopczynski/rahmann/2015a - An online peak extraction algorithm for ion mobility spectrometry data
  • Cakir/etal/2014a - Signals in asbestos related diseases in human breath - preliminary results
  • DAddario/etal/2014a - A modular computational framework for automated peak extraction from ion mobility spectra
  • fink/etal/2014a - Ion mobility spectrometry in breath research
  • Fink/etal/2014b - Volatile Organic Compounds during Inflammation and Sepsis in Rats: A Potential Breath Test Using Ion-mobility Spectrometry
  • furtwaengler/etal/2014a - Signals of neutropenia in human breath?
  • Handa/etal/2014a - Exhaled Breath Analysis for Lung Cancer Detection Using Ion Mobility Spectrometry
  • Kopczynski/Rahmann/2014a - An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data
  • Kreuer/etal/2014a - Two different approaches for pharmacokinetic modeling of exhaled drug concentrations
  • maurer/etal/2014a - Wash-out of ambient air contaminations for breath measurements
  • Maurer/etal/2014b - MIMA—a software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
  • PG572/2014a - Ressourcenbeschränkte Analyse von Ionenmobilitätsspektren mit dem Raspberry Pi
  • wolf/etal/2014a - Multi-capillary column-ion mobility spectrometer (MCC-IMS) breath analysis in ventilated rats: a model with the feasibility of long-term measurements
  • buchinger/etal/2013a - Minimal retarded Propofol signals in human breath using ion mobility spectrometry
  • Cumeras/etal/2013a - What is a good control group?
  • Hauschild/etal/2013a - Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches
  • Kreuer/etal/2013a - Development of a device to measure MCCIMS peaks of pure analytes (IMS-BOX)
  • Rahmann/etal/2013a - Identifying Transcriptional miRNA Biomarkers by Integrating High-Throughput Sequencing and Real-Time PCR Data
  • Schneider/etal/2013a - An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
  • schneider/etal/2013b - An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
  • Canzar/etal/2011c - Solving The Minimum String Cover Problem
  • Cumeras/etal/2012a - Stability and alignment of MCC/IMS devices
  • DAddario/etal/2012a - Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs
  • Hauschild/etal/2012a - Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data -- Reviewing the State of the Art
  • juenger/etal/2012a - Ion mobility spectrometry for microbial volatile organic compounds: A new pathogen identification tool by smelling human pathogenic bacteria
  • Kopczynski/etal/2012a - Peak modeling for Ion mobility spectrometry measurements
  • Schramm/etal/2012b - Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome
  • Baumbach/etal/2011a - Drug delivery related to metabolites in human breath – first results of long term clinical studies using MCC/IMS
  • Baumbach/etal/2011b - Significant different volatile biomarker during bronchoscopic ion mobility spectrometry investigation of patients suffering lung carcinoma
  • Besa/etal/2011a - Volatile Organic Compounds in Chronic Obstructive Pulmonary Disease
  • Cumeras/etal/2011a - Influence of Room Air and Operational Background Emissions on Breath Analysis Using MCC/IMS
  • Darwiche/etal/2011b - Volatile Organic Compounds (VOC) sampled during bronchoscopy in lung cancer patients
  • Koczulla/Hattesohl/2011a - Krankheiten erriechen? Eine kurze Übersicht über elektronische Nasen
  • Maddula/Baumbach/2011a - Ion Mobility Spectrometry for Metabolic Profiling of Human Breath in Intensive Care and Point of Care Applications
  • Maddula/etal/2011a - Correlation analysis on data sets to detect infectious agents in the airways by ion mobility spectrometry of exhaled breath
  • Maddula/etal/2011b - Large Scale Scanning of Metabolites in IMS-Chromatograms
  • Rabis/etal/2011a - Detection of infectious agents in the airways by ion mobility spectrometry of exhaled breath
  • Rupp/etal/2011f - Infections, drug delivery and metabolites detectable in human exhaled breath
  • Westhoff/etal/2011a - Drug delivery related to metabolites in human breath - first results of long term clinical studies using MCC/IMS
  • Westhoff/etal/2011b - Statistical and bioinformatical methods to differentiate chronic obstructive pulmonary disease (COPD) including lung cancer from healthy control by breath analysis using ion mobility spectrometry

Disserations:

  • Kopczynski/2017a - Resource-Constrained Analysis of Ion Mobility Spectrometry Data
  • Martin/2013a - Algorithms and Tools for the Analysis of High-Thoughput DNA Sequencing Data

Final Theses:

Horsch/2014a Horsch, Salome. Analyse zeitabhängiger IMS-Messungen. TU Dortmund, 2014.


Funke/2013a Funke, Henning. Accelerating modeling of MCC/IMS data using GPGPU programming. TU Dortmund University, 2013.


Kirberich/2010a Kirberich, Robert. On-line Analyse von zweidimensionalen Spektrometriedaten. TU Dortmund University, 2010.


Kopczynski/2010a Kopczynski, Dominik. Datenreduktion und Merkmalsextraktion bei Ionen-Mobilitäts-Spektrometrie-Messungen. TU Dortmund University, 2010.


  • Horsch/2014a - Analyse zeitabhängiger IMS-Messungen
  • Funke/2013a - Accelerating modeling of MCC/IMS data using GPGPU programming
  • Kirberich/2010a - On-line Analyse von zweidimensionalen Spektrometriedaten
  • Kopczynski/2010a - Datenreduktion und Merkmalsextraktion bei Ionen-Mobilitäts-Spektrometrie-Messungen

Preliminary Work:

Fritzilas/etal/2010a E. Fritzilas and M. Milanic and S. Rahmann and Y.A. Rios-Solis. Structural identifiability in low-rank matrix factorization. In Algorithmica, Vol. 56, No. 3, pages 313--332, 2010.


Juenger/etal/2010a M. Jünger and B. Bödeker and J.I. Baumbach. Peak assignment in multi-capillary column-ion mobility spectrometry using comparative studies with gas chromatography - mass spectrometry for VOC analysis. In Anal. Bioanal. Chem., Vol. 396, No. 1, pages 471--482, 2010.


Kirberich/2010a Kirberich, Robert. On-line Analyse von zweidimensionalen Spektrometriedaten. TU Dortmund University, 2010.


Kopczynski/2010a Kopczynski, Dominik. Datenreduktion und Merkmalsextraktion bei Ionen-Mobilitäts-Spektrometrie-Messungen. TU Dortmund University, 2010.


Baumbach/2009a J. I. Baumbach. Ion Mobility Spectrometry coupled with Multi-Capillary Columns for Metabolic Profiling of Human Breath. In J. Breath Research, Vol. 3, pages Article 034001 (16pp), 2009.


Bunkowski/etal/2009a A. Bunkowski and B. Bödeker and S. Bader and M. Westhoff and P. Litterst and J. I. Baumbach. Signals in human breath related to Sarcoidosis. Results of a feasibility study using MCC/IMS. In Intern. J. for Ion Mobility Spectrometry, Vol. 12, No. 2, pages 73--79, 2009.


Hariharan/etal/2009a Hariharan, C.B. and Baumbach, J.I. and Vautz, W.. Empirical Prediction of Reduced Ion Mobilities of Secondary Alcohols. In Int. J. Ion Mobility Spectrom., Vol. 12, pages 59--63, 2009.


Vautz/etal/2009a Vautz, W. and Bödeker, B. and Baumbach, J.I. and Bader, S. and Westhoff, M. and Perl, T.. An Implementable Approach to Obtain Reproducible Reduced Ion Mobility. In Int. J. Ion Mobility Spectrom., Vol. 12, pages 47-57, 2009.


Baumbach/etal/2007a Jan Baumbach and Alexander Bunkowski and Sita Lange and Timm Oberwahrenbrock and Nils Kleinbölting and Sven Rahmann and Jörg Ingo Baumbach. IMS2 -- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. In Journal of Integrative Bioinformatics, Vol. 4, pages Article 75, 2007.


Siederdissen/etal/2007a Christian Höner zu Siederdissen and Susanne Ragg and Sven Rahmann. Discovering biomarkers for myocardial infarction from SELDI-TOF spectra. In R. Decker and H.-J. Lenz (editors), Advances in Data Analysis --- Proceedings of the 30th Annual Conference of the Gesellschaft für Klassifikation e.V., pages 569--576, Springer, 2007.


Schliep/Rahmann/2006a Alexander Schliep and Sven Rahmann. Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. In Bioinformatics, Vol. 22, No. 14, pages e424--e430, 2006.


  • Fritzilas/etal/2010a - Structural identifiability in low-rank matrix factorization
  • Juenger/etal/2010a - Peak assignment in multi-capillary column-ion mobility spectrometry using comparative studies with gas chromatography - mass spectrometry for VOC analysis
  • Kirberich/2010a - On-line Analyse von zweidimensionalen Spektrometriedaten
  • Kopczynski/2010a - Datenreduktion und Merkmalsextraktion bei Ionen-Mobilitäts-Spektrometrie-Messungen
  • Baumbach/2009a - Ion Mobility Spectrometry coupled with Multi-Capillary Columns for Metabolic Profiling of Human Breath
  • Bunkowski/etal/2009a - Signals in human breath related to Sarcoidosis. Results of a feasibility study using MCC/IMS
  • Hariharan/etal/2009a - Empirical Prediction of Reduced Ion Mobilities of Secondary Alcohols
  • Vautz/etal/2009a - An Implementable Approach to Obtain Reproducible Reduced Ion Mobility
  • Baumbach/etal/2007a - IMS2 -- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath
  • Siederdissen/etal/2007a - Discovering biomarkers for myocardial infarction from SELDI-TOF spectra
  • Schliep/Rahmann/2006a - Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree